If you’re craving a fall-inspired treat that feels like a warm hug in every bite, this Pumpkin Cream Cheese Chocolate Chip Muffins Recipe is exactly what you need. Imagine moist, fluffy pumpkin muffins bursting with gooey chocolate chips and a luscious cream cheese center, all topped with a crunchy cinnamon streusel. It’s the perfect cozy snack or breakfast pick-me-up that brings together the best flavors of pumpkin and indulgent sweetness in an unforgettable way.

Ingredients You’ll Need
Gathering simple, wholesome ingredients is half the fun here. Each component plays a pivotal role, whether adding moisture, that rich pumpkin flavor, or the delightful texture contrasts that make this recipe shine.
- 4 large eggs: Bind all the ingredients together while providing structure and fluffiness.
- 1 can pumpkin puree (15 oz/425 g): Use 100% pure pumpkin for that natural, earthy pumpkin taste and vibrant color.
- 1 cup plain full-fat Greek yogurt (8 oz/227 g): Adds tanginess and keeps the muffins moist and tender.
- ¼ cup avocado oil (2 fl oz/60 ml): A mild, heart-healthy oil that ensures a soft crumb without weighing down the muffins.
- 1 tablespoon vanilla bean paste: Intensifies the sweet aroma and depth of flavor; vanilla extract works too!
- 2â…“ cups all-purpose flour (11.5 oz/325 g): The foundation that gives muffins their structure; unbleached is preferred for better texture.
- 1¾ cups light brown sugar (14 oz/395 g): Brings caramel notes and moisture for rich sweetness.
- 2 teaspoons baking soda: The leavening agent that helps muffins rise beautifully.
- 1 teaspoon salt: Balances sweetness and enhances all flavors.
- Pumpkin Spice Mix: A warm, fragrant blend that creates that unmistakable autumn vibe. Use as desired.
- 2 cups bittersweet chocolate baking chips (12 oz/340 g): Melts into pockets of luscious chocolate goodness in every bite.
- 16 oz softened full-fat cream cheese: For the decadent, creamy swirl that makes these muffins truly special.
- ¼ cup granulated sugar (50 g): Sweetens the cream cheese filling just right.
- 1 tablespoon all-purpose flour (8 g): Stabilizes the cream cheese filling so it holds together perfectly.
- 1 large egg (for cream cheese filling): Adds richness and helps bind the filling.
- 1 tablespoon milk (15 ml): Softens the cream cheese mixture for silky smoothness.
- 1¼ cups all-purpose flour (about 6 oz/180 g): Used in the buttery streusel topping to add a satisfying crunch.
- ½ cup brown sugar (4 oz/113 g): Sweet and caramelized, perfect for topping.
- 1 teaspoon ground cinnamon: Brings warm spice to the streusel for extra flavor layers.
- ½ cup unsalted butter, melted (4 oz/113 g): Richness that crisps up the streusel beautifully.
- 1 large egg white: Helps bind the streusel together and crisp it up during baking.
- Pinch of salt: Enhances the flavors in the streusel topping.
How to Make Pumpkin Cream Cheese Chocolate Chip Muffins Recipe
Step 1: Preheat and Prepare
Start by preheating your oven to a robust 425°F (218°C). A hot oven kick-starts the perfect rise in these muffins. Prepare your 24-cup muffin tin by either greasing well or lining with paper liners to keep every muffin intact and easy to remove later.
Step 2: Mix the Wet Ingredients
In a large mixing bowl, whisk together 4 large eggs, the entire can of pumpkin puree, full-fat Greek yogurt, avocado oil, and that aromatic vanilla bean paste. Aim for a smooth, cohesive mixture — this will be the moist base that carries the rich pumpkin flavor throughout your muffins.
Step 3: Combine the Dry Ingredients
In a separate bowl, stir together the all-purpose flour, brown sugar, baking soda, salt, and your chosen amount of pumpkin spice mix. Mixing these dry ingredients well ensures that you get even pockets of spice and sweetness in every bite.
Step 4: Gently Fold Dry into Wet
Slowly incorporate the dry ingredients into the wet mixture. Be gentle — overmixing can make muffins tough, so it’s okay if a few lumps remain. This careful folding keeps the texture wonderfully light and tender.
Step 5: Prepare the Cream Cheese Filling
Use a hand or stand mixer to blend softened cream cheese, granulated sugar, flour, an egg, and milk until completely smooth and lump-free. This luscious filling is the secret superstar that adds a delightful burst of creamy richness inside each muffin.
Step 6: Make the Streusel Topping
In another bowl, mix flour, brown sugar, cinnamon, and a pinch of salt. Then stir in melted butter and egg white until you have a crumbly mixture. This streusel topping adds the perfect touch of crunch and warm spice to your muffins.
Step 7: Assemble the Muffin Cups
Fill each muffin cup about one-third full with pumpkin batter. Add a generous dollop of the cream cheese mixture in the center, then top with more pumpkin batter to fully encase the filling. Finally, sprinkle the streusel topping evenly over all the muffins to create a beautiful crust.
Step 8: Bake with Temperature Shift
Place the muffin tray in the preheated oven and bake at 425°F (218°C) for about 6-7 minutes to get that initial rise. Then lower the heat to 350°F (177°C) and bake for the remaining time, totaling approximately 20 minutes. This two-step baking helps form a tender, fluffy crumb and a perfectly crisp top.
Step 9: Check for Doneness
Test your muffins with a toothpick inserted in the center; it should come out clean or with a few moist crumbs but no wet batter. If too moist, pop them back in for an extra 5 minutes at 350°F (177°C) to finish baking.
Step 10: Cool Before Enjoying
Allow muffins to rest in the pan for a few minutes, then transfer to a wire rack to cool completely. Letting them cool ensures they set nicely and the flavors meld harmoniously, giving you that perfect, irresistible bite.
How to Serve Pumpkin Cream Cheese Chocolate Chip Muffins Recipe

Garnishes
Sprinkle a little powdered sugar on top just before serving for a pretty finish. A light drizzle of maple syrup or a dollop of whipped cream pairs beautifully and adds extra richness without overpowering the pumpkin-spice magic.
Side Dishes
Serve alongside a steaming cup of chai tea or freshly brewed coffee—both bring out the warm spices and creamy chocolate notes in the muffins. For a more filling breakfast, a scoop of Greek yogurt with honey and toasted nuts complements these muffins perfectly.
Creative Ways to Present
Try slicing the muffins in half and lightly toasting them for a delightful warm treat. You can also use them as a base for a pumpkin-themed parfait or serve them with a scoop of cinnamon ice cream during cooler evenings. These muffins are as versatile as they are delicious.
Make Ahead and Storage
Storing Leftovers
Keep leftover muffins in an airtight container at room temperature for up to 2 days to maintain their moistness. For best taste, enjoy them within this window as their creamy filling is freshest then.
Freezing
To freeze, wrap each muffin individually in plastic wrap and place in a freezer-safe bag. They keep well for up to 3 months. Thaw overnight in the fridge or at room temperature before serving.
Reheating
Warm muffins in a microwave for 15-20 seconds or pop them in a preheated oven at 325°F (163°C) for 5-7 minutes. Reheating revives their soft texture and melts the chocolate chips slightly, echoing that fresh-from-the-oven experience.
FAQs
Can I use canned pumpkin pie filling instead of pumpkin puree?
It’s best to stick with pure pumpkin puree, as pumpkin pie filling contains added sugar and spices which can alter the flavor and texture of the muffins.
What type of chocolate chips work best in this recipe?
Bittersweet or semi-sweet chocolate chips are ideal because their slightly bitter edge balances the sweetness of the muffin and cream cheese filling beautifully.
Can I substitute the avocado oil with another oil?
Yes! Light olive oil or melted coconut oil can also work well, just keep in mind they may slightly change the flavor profile.
How do I know when the muffins are fully baked?
Use a toothpick inserted into the muffin center; it should come out clean or with only a few moist crumbs. Avoid wet batter to ensure doneness without dryness.
Is it necessary to reduce the oven temperature during baking?
The initial high heat jumpstarts muffin rise for a tender crumb, then lowering the temperature allows them to bake through without burning the tops. Sticking to this step gives the best texture.
Final Thoughts
Embracing the season with the Pumpkin Cream Cheese Chocolate Chip Muffins Recipe is a little moment of magic you can bake at home. These muffins deliver a cozy blend of flavors and textures that feel just right for any occasion. Trust me, once you try them, they’ll quickly become a beloved staple in your baking rotation. So grab your mixing bowls and get ready for warm, delicious smiles all around!
Print
Pumpkin Cream Cheese Chocolate Chip Muffins Recipe
- Prep Time: 15 minutes
- Cook Time: 20 minutes
- Total Time: 35 minutes
- Yield: 24 muffins
- Category: Dessert
- Method: Baking
- Cuisine: American
Description
These Pumpkin Cream Cheese Chocolate Chip Muffins combine moist pumpkin-spiced batter with a rich, creamy cheesecake center and a sweet, cinnamon streusel topping. Perfectly balanced flavors and textures make these muffins a delightful treat for fall or any time you crave a comforting baked good.
Ingredients
Muffin Batter
- 4 large eggs
- 1 can pumpkin puree (15 oz / 425 g), 100% pure pumpkin, not pie filling
- 1 cup plain full-fat Greek yogurt (8 oz / 227 g)
- ¼ cup avocado oil (2 fl oz / 60 ml)
- 1 tablespoon vanilla bean paste (or vanilla extract)
- 2â…“ cups all-purpose flour (11.5 oz / 325 g), unbleached preferred
- 1¾ cups brown sugar (14 oz / 395 g), light brown suggested
- 2 teaspoons baking soda
- 1 teaspoon salt
- Pumpkin Spice Mix (blend of cinnamon, nutmeg, and other warm spices) as desired
- 2 cups bittersweet chocolate baking chips (12 oz / 340 g), semi-sweet or bittersweet preferred
Cream Cheese Filling
- 16 oz (454 g) cream cheese, softened, full-fat
- ¼ cup granulated sugar (50 g)
- 1 tablespoon all-purpose flour (8 g)
- 1 large egg
- 1 tablespoon milk (15 ml)
Streusel Topping
- 1¼ cups all-purpose flour (about 6 oz / 180 g)
- ½ cup unsalted butter, melted (4 oz / 113 g)
- ½ cup brown sugar (4 oz / 113 g)
- 1 teaspoon ground cinnamon
- 1 large egg white
- Pinch of salt
Instructions
- Preheat Oven
Preheat your oven to 425°F (218°C). Make sure the oven reaches the full temperature before baking to ensure proper rising. Grease a 24-cup muffin tin or line it with paper liners for easy removal.
- Prepare Wet Ingredients
In a large bowl, whisk together 4 large eggs, pumpkin puree, Greek yogurt, avocado oil, and vanilla bean paste until smooth and well combined.
- Mix Dry Ingredients
In a separate large bowl, combine the all-purpose flour, brown sugar, baking soda, salt, and pumpkin spice mix. Stir thoroughly to ensure the spices are evenly distributed.
- Combine Wet and Dry
Slowly fold the dry ingredients into the wet mixture. Stir gently and avoid overmixing; a few lumps are acceptable to keep muffins tender and light.
- Make Cream Cheese Filling
Using a hand or stand mixer, beat the softened cream cheese, granulated sugar, flour, egg, and milk together until the mixture is smooth, creamy, and free of lumps.
- Prepare Streusel Topping
In a bowl, combine flour, brown sugar, cinnamon, and salt. Stir in the melted butter and egg white until the streusel mixture is evenly combined, with the egg white helping the topping bind and crisp.
- Assemble Muffins
Spoon about one-third of the pumpkin batter into each muffin cup. Add a dollop of cream cheese filling in the center, then cover with remaining pumpkin batter to fully encase the cream cheese. Finally, sprinkle the streusel topping generously over each muffin.
- Initial Bake
Bake the muffins in the preheated oven at 425°F (218°C) for 6-7 minutes to allow for oven spring and initial rise.
- Continue Baking
Reduce the oven temperature to 350°F (177°C) and continue baking for an additional 13-14 minutes or until a toothpick inserted in the muffin center comes out clean or with a few moist crumbs but no wet batter.
- Check and Cool
If muffins are still too moist, bake for an additional 5 minutes at 350°F (177°C). Then allow the muffins to cool in the pan for a few minutes before transferring to a wire rack to cool completely. Cooling helps set the structure and enhances flavor.
Notes
- Ensure the pumpkin puree is 100% pure pumpkin, not pie filling, for best flavor and texture.
- Do not overmix the batter to prevent dense muffins; lumps are okay.
- The cream cheese filling adds moisture and richness, so be sure to fully encase it in the batter to keep it contained.
- The streusel topping enhances texture and adds a sweet, cinnamon crunch.
- Use paper liners for easy cleanup and muffin removal.
- If you prefer a less sweet muffin, reduce the sugar slightly in the batter or streusel.
- Let muffins cool completely before storing to maintain structure.

